python tools for school of medicine
Project description
# SOM
School of Medicine Python Tools
under development
Starting some very basic Python based tools for working with / moving SOM data, likely to and from Google Cloud.
## Installation
pip install git+git://github.com/radinformatics/som-tools.git
For official releases, eventually will be:
pip install som
## Use Cases
### Convert Dicom to Nifti
See the [full example](examples/dicom2nifti.py). Briefly, to save to a custom output folder:
output_folder = ‘/home/vanessa/Desktop’ outfiles = dicom2nifti(folders,output_folder)
DEBUG:som:Found 1 directories with dicom. DEBUG:som:First dicom found with dimension 512 by 512, using as standard. INFO:som:Saving /home/vanessa/Desktop/ST-2034619995971856625.nii.gz DEBUG:som:Found 1 directories with dicom. DEBUG:som:First dicom found with dimension 512 by 512, using as standard. INFO:som:Saving /home/vanessa/Desktop/ST-9134992622373037207.nii.gz DEBUG:som:Found 1 directories with dicom. DEBUG:som:First dicom found with dimension 512 by 512, using as standard. INFO:som:Saving /home/vanessa/Desktop/ST-6141651738472648472.nii.gz
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