Convert data to nwb
Project description
NWB conversion tools
NWB Conversion Tools is a package for creating NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
Under heavy construction. API is changing rapidly.
Features:
- Command line interface
- Python API
- Leverages SpikeExtractor to support conversion from a number or proprietary formats.
Installation
To install nwb-conversion-tools directly in an existing environment:
$ pip install nwb-conversion-tools
Alternatively, to clone the repository and set up a conda environment, do:
$ git clone https://github.com/catalystneuro/nwb-conversion-tools
$ cd nwb-conversion-tools
$ conda env create -f make_env.yml
$ conda activate nwb_conversion_env
$ pip install .
Dependencies
NWB Conversion Tools relies heavily on SpikeExtractors for electrophysiology and on ROIExtractors for optophysiology data.
You can use a graphical interface for your converter with NWB Web GUI.
Used by
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
nwb-conversion-tools-0.7.0.tar.gz
(34.5 kB
view hashes)
Close
Hashes for nwb-conversion-tools-0.7.0.tar.gz
Algorithm | Hash digest | |
---|---|---|
SHA256 | 6f0f389f2350df7023a2e066ad99d1cf509af555a656b59a7f36dcdcc18fdebe |
|
MD5 | bedd82e83fbc87275fa35ea79df63e78 |
|
BLAKE2b-256 | 549228e51ebc3ef3ae020016c159997804930c3a5488e70abde44ea187aa99c4 |