Reasoning on the response of logical signaling networks with Answer Set Programming
Project description
For more information, contact details and bibliography, please visit caspo’s website.
1.6 (2014-01-27)
Use a single input file for intervention scenarios
1.5 (2014-01-19)
Accept PKN with loops (cut the loops in the search)
- Adds verbosity levels for GTTs
Compute GTTs (–gtts 1)
Write GTTs representatives and core predictions (–gtts 2)
Write each GTT and basic stats (–gtts 3)
Adds –truncate command line option to select the truncation function
Adds –max-and command line option to limit AND gates’ size
Adds a random model generator for benchmarking
Implements minimal intervention strategies
Rename previous caspo.py to caspo-learn.py and creates caspo-control.py
1.4 (2013-06-10)
Use jumpy configuration by default for clasp
Adds –clasp command line option to use custom clasp’s parameters
1.3 (2013-03-08)
OO refactoring
Replace deprecated optparse with argparse
Remove short options
Implements k-fold cross validation
Adds size tolerance as an option
Sphinx docs
1.2 (2013-02-05)
Depends on PyASP instead of BioASP
Package the full ASP encoding
Implements old BioASP’s functionality
Upgrade dependency on cellnopt.wrapper to 1.0.5
1.1 (2012-12-20)
Removes CellNOpt installation relying on cellnopt.wrapper
1.0 (2012-12-03)
Initial release
Project details
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